Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_1958PFAM: GntR domain protein; KEGG: xau:Xaut_1402 GntR family transcriptional regulator. (340 aa)    
Predicted Functional Partners:
Plim_1192
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: sfu:Sfum_3022 acetolactate synthase, small subunit.
   
    0.687
Plim_2465
PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_2468 putative transport protein.
  
   
 0.472
Plim_0774
PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: hiq:CGSHiGG_09180 xylose operon regulatory protein.
  
  
 0.441
Plim_0189
KEGG: ppd:Ppro_2695 hypothetical protein.
  
     0.432
Plim_3793
Demethylmenaquinone methyltransferase-like protein.
 
   
 0.432
Plim_3973
Metallophosphoesterase.
  
     0.428
Plim_2801
Helix-turn-helix- domain containing protein AraC type.
  
  
 0.427
Plim_3035
Helix-turn-helix- domain containing protein AraC type; KEGG: proteophosphoglycan 5.
  
  
 0.419
Plim_0721
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: pca:Pcar_0765 putative ornithine cyclodeaminase.
 
     0.414
Plim_1817
TIGRFAM: Flp pilus assembly protein CpaB; KEGG: reh:H16_A0718 flp pilus assembly protein.
  
     0.412
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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