STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_1960PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_0533 oxidoreductase, FAD-binding. (407 aa)    
Predicted Functional Partners:
Plim_1959
PFAM: aldo/keto reductase; KEGG: ppf:Pput_4804 aldo/keto reductase.
 
    0.945
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
 
 0.928
Plim_1895
TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: bca:BCE_A0165 MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
  
 0.891
Plim_0924
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: sus:Acid_3971 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 
 0.768
Plim_3850
Hypothetical protein.
  
     0.657
Plim_0574
PFAM: Haemagluttinin repeat-containing protein; KEGG: dal:Dalk_0372 filamentous hemagglutinin family outer membrane protein.
  
     0.655
Plim_0901
PFAM: lipopolysaccharide kinase; KEGG: cja:CJA_0503 lipopolysaccharide core biosynthesis protein WaaP.
  
     0.653
Plim_2361
KEGG: ade:Adeh_2513 ATP-dependent nuclease subunit B-like.
  
     0.623
Plim_3095
Secretory protein YscJ/FliF family protein.
  
     0.617
Plim_0866
PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: bpt:Bpet4348 hypothetical protein.
  
  
 0.603
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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