STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1966PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo1667 putative ABC transporter ATP- binding protein. (233 aa)    
Predicted Functional Partners:
Plim_0127
PFAM: protein of unknown function DUF214; KEGG: saz:Sama_1472 ABC transporter permease protein.
 
 0.960
Plim_1965
PFAM: protein of unknown function DUF214; KEGG: vco:VC0395_A2132 hypothetical protein.
 
   0.922
Plim_3659
Protein of unknown function DUF214; KEGG: eba:ebA7253 hypothetical protein.
  
   0.707
Plim_2108
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mmw:Mmwyl1_4145 ATPase central domain- containing protein.
  
     0.630
Plim_2519
PFAM: AAA ATPase central domain protein; KEGG: AAA family ATPase, putative.
  
     0.629
Plim_2518
PFAM: protein of unknown function DUF214; KEGG: glo:Glov_0758 lipoprotein releasing system, transmembrane protein, LolC/E family.
  
   0.628
Plim_1964
PFAM: glycosyl transferase family 9; KEGG: sfu:Sfum_0375 lipopolysaccharide heptosyltransferase I.
       0.620
Plim_3164
Protein of unknown function DUF214.
 
 
 0.582
pheS
TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: shl:Shal_1812 phenylalanyl-tRNA synthetase subunit alpha; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
   0.577
Plim_1967
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2418 MATE efflux family protein.
     
 0.418
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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