STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1971KEGG: sus:Acid_4361 galactose-1-phosphate uridylyltransferase. (358 aa)    
Predicted Functional Partners:
Plim_1343
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; KEGG: mxa:MXAN_3507 UDP-glucose 4-epimerase.
  
 
 0.944
Plim_3736
Nucleotide sugar dehydrogenase; KEGG: HNRNPUL2, HNRPUL2; heterogeneous nuclear ribonucleoprotein U-like 2.
    
 0.834
Plim_4027
UTP--glucose-1-phosphate uridylyltransferase.
    
 
 0.781
Plim_3582
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
   
  
 0.720
Plim_1972
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; KEGG: sus:Acid_3123 putative heme-binding protein.
       0.590
Plim_0702
PFAM: Aldose 1-epimerase; KEGG: bsu:BSU18360 hypothetical protein.
  
 
 0.468
Plim_1621
KEGG: psp:PSPPH_3238 hypothetical protein.
  
 
 0.468
Plim_3008
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.468
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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