Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_1975KEGG: sus:Acid_1705 signal peptide and transmembrane prediction. (365 aa)    
Predicted Functional Partners:
Plim_0902
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; KEGG: sus:Acid_3123 putative heme-binding protein.
 
     0.973
Plim_0353
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: blue (type 1) copper domain protein; KEGG: hypothetical protein.
     0.950
Plim_0666
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: mfa:Mfla_1033 L-sorbosone dehydrogenase, putative.
 
     0.812
Plim_1723
TIGRFAM: heme-binding protein; KEGG: mrd:Mrad2831_3094 glucose/sorbosone dehydrogenase-like protein.
  
     0.774
Plim_3308
Heme-binding protein.
  
     0.774
Plim_1610
KEGG: rde:RD1_3874 hypothetical protein.
  
     0.767
Plim_1121
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_3745 hypothetical protein.
  
     0.763
Plim_0665
Hypothetical protein; KEGG: pen:PSEEN1886 arylesterase.
  
     0.762
Plim_1972
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; KEGG: sus:Acid_3123 putative heme-binding protein.
 
     0.762
Plim_1120
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_3744 hypothetical protein.
  
     0.761
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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