STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1981PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: dds:Ddes_1649 NADH:flavin oxidoreductase/NADH oxidase. (477 aa)    
Predicted Functional Partners:
Plim_1982
TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: pca:Pcar_2074 molybdenum cofactor biosynthesis protein.
       0.542
Plim_1980
Hypothetical protein; KEGG: xau:Xaut_4501 putative head morphogenesis protein SPP1 gp7.
       0.508
Plim_1978
Hypothetical protein; KEGG: msl:Msil_3733 pyrrolo-quinoline quinone.
 
     0.480
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.422
Plim_3986
Conserved hypothetical protein.
   
    0.422
Plim_2369
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: aba:Acid345_4052 2-acyl-glycerophospho- ethanolamine acyltransferase.
  
  
 0.407
Plim_0820
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bcs:BCAN_B0031 hypothetical protein.
 
   
 0.406
Plim_1707
KEGG: sus:Acid_4741 hypothetical protein.
  
     0.401
Plim_1785
PFAM: FG-GAP repeat protein; KEGG: sus:Acid_7682 FG-GAP repeat-containing protein.
  
     0.401
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.