STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1987KEGG: sus:Acid_5332 hypothetical protein. (700 aa)    
Predicted Functional Partners:
Plim_1450
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.743
Plim_1449
KEGG: sus:Acid_5040 hypothetical protein.
  
     0.727
Plim_3971
Protein of unknown function DUF1549.
  
     0.724
Plim_4094
Protein of unknown function DUF1549.
  
     0.720
Plim_1438
Hypothetical protein; KEGG: dol:Dole_0200 cytochrome c class I.
  
     0.704
Plim_0259
Hypothetical protein; KEGG: acp:A2cp1_0259 tetratricopeptide TPR_2 repeat protein.
  
     0.696
Plim_2156
KEGG: sus:Acid_4453 transmembrane prediction; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.696
Plim_2019
PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A2712 major facilitator transporter.
  
     0.684
Plim_4107
Hypothetical protein.
  
     0.673
Plim_0258
SMART: Pyrrolo-quinoline quinone; KEGG: hne:HNE_0773 PQQ repeat-containing protein.
  
     0.665
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.