STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1992PFAM: ABC-3 protein; iron dependent repressor; SMART: iron dependent repressor; KEGG: rce:RC1_2462 zinc transport system membrane protein TroD. (458 aa)    
Predicted Functional Partners:
Plim_1994
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_2839 ABC transporter related.
 
 0.999
Plim_1995
PFAM: periplasmic solute binding protein; KEGG: rce:RC1_2459 periplasmic zinc-binding protein TroA; Belongs to the bacterial solute-binding protein 9 family.
 
 0.998
Plim_1993
PFAM: ABC-3 protein; iron dependent repressor; KEGG: rce:RC1_2461 zinc transport system membrane protein TroC.
 
 
0.976
Plim_0747
PFAM: ferric-uptake regulator; KEGG: scl:sce7206 FUR family regulator protein; Belongs to the Fur family.
  
  
 0.759
Plim_2145
PFAM: ferric-uptake regulator; KEGG: ank:AnaeK_3863 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
  
 0.759
Plim_0143
KEGG: oca:OCAR_5635 hypothetical protein.
  
  
 0.600
Plim_3404
Hypothetical protein.
  
  
 0.600
Plim_2534
Redoxin domain protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.535
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.516
Plim_2762
PAS sensor protein.
     
 0.502
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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