STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1995PFAM: periplasmic solute binding protein; KEGG: rce:RC1_2459 periplasmic zinc-binding protein TroA; Belongs to the bacterial solute-binding protein 9 family. (370 aa)    
Predicted Functional Partners:
Plim_1994
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_2839 ABC transporter related.
 
 
 0.999
Plim_1993
PFAM: ABC-3 protein; iron dependent repressor; KEGG: rce:RC1_2461 zinc transport system membrane protein TroC.
 
 0.998
Plim_1992
PFAM: ABC-3 protein; iron dependent repressor; SMART: iron dependent repressor; KEGG: rce:RC1_2462 zinc transport system membrane protein TroD.
 
 0.997
Plim_3435
Conserved hypothetical protein.
  
  
 0.816
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.701
rpmB
TIGRFAM: ribosomal protein L28; KEGG: dvu:DVU1211 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.693
Plim_1476
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mxa:MXAN_6524 CobW/P47K family protein.
  
  
 0.673
Plim_2842
Cobalamin synthesis protein P47K.
  
  
 0.673
Plim_1996
PFAM: protein of unknown function UPF0187; KEGG: mxa:MXAN_3733 hypothetical protein.
       0.541
Plim_2241
PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; KEGG: tcx:Tcr_0904 iron dependent repressor.
 
  
 0.484
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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