STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2019PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A2712 major facilitator transporter. (556 aa)    
Predicted Functional Partners:
Plim_1628
KEGG: sus:Acid_5538 hypothetical protein.
  
     0.746
Plim_2846
Glycosyl hydrolase family 98 putative carbohydrate binding module.
  
     0.705
Plim_1987
KEGG: sus:Acid_5332 hypothetical protein.
  
     0.684
Plim_1957
TIGRFAM: heme-binding protein; PFAM: coagulation factor 5/8 type domain protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: msl:Msil_0148 putative glucose/sorbosone dehydrogenase.
 
     0.675
Plim_1723
TIGRFAM: heme-binding protein; KEGG: mrd:Mrad2831_3094 glucose/sorbosone dehydrogenase-like protein.
  
     0.670
Plim_3308
Heme-binding protein.
  
     0.667
Plim_1978
Hypothetical protein; KEGG: msl:Msil_3733 pyrrolo-quinoline quinone.
  
     0.662
Plim_0259
Hypothetical protein; KEGG: acp:A2cp1_0259 tetratricopeptide TPR_2 repeat protein.
  
     0.652
Plim_1975
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
  
     0.630
Plim_1580
Large, multifunctional secreted protein.
  
     0.629
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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