Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_2022PFAM: protein of unknown function DUF201; KEGG: lch:Lcho_3151 hypothetical protein. (425 aa)    
Predicted Functional Partners:
Plim_2407
PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: lch:Lcho_3148 triphosphoribosyl-dephospho-CoA protein.
 
   
 0.819
ffsA
Formylmethanofuran/tetrahydromethanopterin N- formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.807
Plim_1421
PFAM: glutamate synthase alpha subunit domain protein; KEGG: msl:Msil_2403 formylmethanofuran dehydrogenase subunit C.
 
     0.807
Plim_1687
TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: Amidohydrolase 3; KEGG: noc:Noc_0024 DNA/RNA non-specific endonuclease.
 
     0.807
Plim_2299
Formylmethanofuran dehydrogenase subunit B-like protein; KEGG: noc:Noc_0025 formylmethanofuran dehydrogenase.
 
     0.807
mch
Methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family.
 
     0.807
Plim_2423
TIGRFAM: beta-ribofuranosylaminobenzene 5'- phosphate synthase family; PFAM: GHMP kinase; KEGG: bxe:Bxe_B2430 beta-ribofuranosylaminobenzene 5'-phosphate synthase.
 
     0.806
Plim_3519
Formaldehyde-activating enzyme.
 
   
 0.802
Plim_2424
PFAM: protein of unknown function DUF447; KEGG: mrd:Mrad2831_2726 hypothetical protein.
 
     0.798
Plim_1285
TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); KEGG: msl:Msil_2390 formaldehyde-activating enzyme.
 
   
 0.797
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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