Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_2027KEGG: mfa:Mfla_2222 secretion protein HlyD. (481 aa)    
Predicted Functional Partners:
Plim_2028
KEGG: nar:Saro_3787 outer membrane protein-like protein.
   0.973
Plim_2026
Toxin secretion ABC transporter ATP-binding protein; KEGG: mfa:Mfla_2223 ABC transporter related.
 
 0.962
Plim_0892
PFAM: phosphate-selective porin O and P; KEGG: neu:NE2247 hypothetical protein.
  
     0.663
Plim_3748
Sulphate transporter.
  
     0.624
Plim_1781
KEGG: pat:Patl_4270 putative Zn-dependent aminopeptidase.
  
     0.558
Plim_0386
PFAM: protein of unknown function DUF1597; KEGG: mca:MCA2112 hypothetical protein.
  
     0.513
Plim_2370
KEGG: sus:Acid_5886 outer membrane efflux protein.
  
   0.512
Plim_2850
Outer membrane efflux protein.
  
   0.498
Plim_4213
FAD dependent oxidoreductase.
  
     0.455
Plim_0090
Conserved hypothetical protein; KEGG: outer membrane efflux protein.
  
   0.448
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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