STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2028KEGG: nar:Saro_3787 outer membrane protein-like protein. (617 aa)    
Predicted Functional Partners:
Plim_2027
KEGG: mfa:Mfla_2222 secretion protein HlyD.
   0.976
Plim_1584
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dar:Daro_2627 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.943
Plim_2026
Toxin secretion ABC transporter ATP-binding protein; KEGG: mfa:Mfla_2223 ABC transporter related.
 
  
 0.927
Plim_3748
Sulphate transporter.
  
     0.651
Plim_0259
Hypothetical protein; KEGG: acp:A2cp1_0259 tetratricopeptide TPR_2 repeat protein.
  
     0.641
Plim_0892
PFAM: phosphate-selective porin O and P; KEGG: neu:NE2247 hypothetical protein.
  
     0.634
Plim_2317
KEGG: net:Neut_1053 hypothetical protein.
  
   
 0.591
Plim_1194
PFAM: peptidase M41; KEGG: gur:Gura_0348 hypothetical protein.
  
     0.566
Plim_0670
KEGG: noc:Noc_0152 secretion protein HlyD.
  
   0.555
Plim_1115
PFAM: secretion protein HlyD family protein; KEGG: met:M446_0165 secretion protein HlyD family protein.
  
   0.516
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.