STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2039PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sbm:Shew185_2868 amidohydrolase. (1498 aa)    
Predicted Functional Partners:
Plim_0035
PFAM: N-formylglutamate amidohydrolase; KEGG: hypothetical gene supported by CR386744.
 
  
 0.861
Plim_4208
Tetratricopeptide TPR_2 repeat protein.
  
     0.686
Plim_3628
FG-GAP repeat protein.
  
     0.662
Plim_0290
TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pmy:Pmen_1797 putative agmatinase; Belongs to the arginase family.
  
  
 0.654
Plim_2538
PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ilo:IL2328 dipeptidyl aminopeptidase.
 
     0.631
Plim_3912
Peptidase S9 prolyl oligopeptidase active site domain protein.
 
     0.574
Plim_0839
ATPase-like protein involved in DNA repair; KEGG: liver stage antigen.
  
     0.567
Plim_3899
Peptidase M28.
  
   
 0.501
Plim_1021
Exporter of the RND superfamily protein-like protein; KEGG: vok:COSY_0866 hypothetical protein.
  
     0.496
Plim_2477
PFAM: peptidase M19 renal dipeptidase; KEGG: pzu:PHZ_c0288 dipeptidase.
 
     0.484
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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