Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2043PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: bpy:Bphyt_0018 RNA-directed DNA polymerase (reverse transcriptase). (446 aa)    
Predicted Functional Partners:
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
   
   0.807
Plim_1514
KEGG: scl:sce6902 polyA polymerase related protein.
  
     0.706
Plim_3377
Appr-1-p processing domain protein.
  
     0.636
Plim_2042
Hypothetical protein.
       0.598
Plim_1513
PFAM: protein of unknown function DUF549; KEGG: hypothetical protein.
  
     0.520
Plim_0747
PFAM: ferric-uptake regulator; KEGG: scl:sce7206 FUR family regulator protein; Belongs to the Fur family.
  
     0.489
Plim_2754
Hypothetical protein.
  
     0.474
Plim_3173
Beta-lactamase domain protein.
  
     0.463
Plim_0657
PFAM: Methyltransferase type 11; KEGG: scl:sce3690 hypothetical protein.
  
     0.421
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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