Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_2065PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2093 ABC-type transport system involved in resistance to organic solvents. (273 aa)    
Predicted Functional Partners:
Plim_2064
PFAM: protein of unknown function DUF140; KEGG: gsu:GSU0817 hypothetical protein; Belongs to the MlaE permease family.
 0.999
Plim_2066
PFAM: Mammalian cell entry related domain protein; KEGG: glo:Glov_0495 mammalian cell entry related domain protein.
 
 0.993
Plim_1405
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_1414 binding-protein-dependent transport systems inner membrane component.
 
      0.899
Plim_0741
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce0179 carbohydrate ABC transporter.
    
0.852
Plim_0935
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: ppd:Ppro_3025 ABC transporter related.
    
0.827
Plim_0740
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce0180 carbohydrate ABC transporter.
     
0.729
Plim_0768
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce0659 sodium ABC transporter ATP- binding protein.
    
0.714
Plim_3673
ABC transporter related protein; KEGG: eba:ebA7253 hypothetical protein.
    
0.703
Plim_0153
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bpa:BPP2249 putative anti-sigma factor antagonist.
   
   0.615
Plim_0427
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dal:Dalk_0884 anti-sigma-factor antagonist.
   
   0.615
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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