Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_2066PFAM: Mammalian cell entry related domain protein; KEGG: glo:Glov_0495 mammalian cell entry related domain protein. (388 aa)    
Predicted Functional Partners:
Plim_2064
PFAM: protein of unknown function DUF140; KEGG: gsu:GSU0817 hypothetical protein; Belongs to the MlaE permease family.
 
 0.995
Plim_2065
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2093 ABC-type transport system involved in resistance to organic solvents.
 
 0.993
Plim_2582
OmpA/MotB domain protein.
   
   0.664
Plim_4077
OmpA/MotB domain protein.
   
   0.664
Plim_2365
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rty:RT0150 outer membrane protein Omp1.
 
    0.571
Plim_4190
NolW domain protein; KEGG: similar to ELKS/RAB6-interacting/CAST family member 2.
 
    0.569
Plim_2805
Outer membrane efflux protein.
 
     0.512
Plim_0641
KEGG: SNF2 superfamily protein; Belongs to the bacterial secretin family.
 
    0.510
Plim_0937
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.486
Plim_3688
Type II and III secretion system protein.
 
    0.484
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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