Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2067PFAM: NHL repeat containing protein; KEGG: sus:Acid_6565 NHL repeat-containing protein. (371 aa)    
Predicted Functional Partners:
Plim_0378
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: pat:Patl_0815 hypothetical protein.
  
   0.790
Plim_0517
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_6290 hypothetical protein.
  
   0.789
Plim_1526
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_6547 hypothetical protein.
  
   0.784
Plim_3229
Protein of unknown function DUF1549.
  
   0.782
Plim_2950
Protein of unknown function DUF1549.
  
   0.778
Plim_3921
Protein of unknown function DUF1549.
  
   0.773
Plim_1796
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_0974 hypothetical protein.
  
   0.766
Plim_4138
Protein of unknown function DUF1501.
  
     0.760
Plim_0518
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_0975 hypothetical protein.
  
     0.759
Plim_2948
Protein of unknown function DUF1501.
  
     0.759
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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