STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2083PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: gme:Gmet_2818 putative PAS/PAC sensor protein. (556 aa)    
Predicted Functional Partners:
Plim_2762
PAS sensor protein.
  
 0.903
Plim_2056
KEGG: aba:Acid345_2985 putative anti-sigma regulatory factor, serine/threonine protein kinase.
 
 
 0.875
Plim_0678
Ammonium transporter; KEGG: pla:Plav_1427 integral membrane sensor signal transduction histidine kinase; TIGRFAM: ammonium transporter; PAS sensor protein; PFAM: Rh family protein/ammonium transporter; ATP- binding region ATPase domain protein; Hpt domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein.
  
 0.838
Plim_2057
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dal:Dalk_4200 anti-sigma-factor antagonist.
  
   0.831
Plim_3703
Response regulator receiver.
 
 
 0.795
Plim_1906
PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; response regulator receiver; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; response regulator receiver; KEGG: rce:RC1_1758 chemotaxis protein CheA.
  
  
 0.696
Plim_2329
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: scl:sce7775 hypothetical protein.
  
 
 0.661
Plim_2500
TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: tdn:Suden_0707 flagellar motor switch protein FliM.
   
    0.645
Plim_2860
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
   0.639
Plim_3367
Response regulator receiver.
  
  
 0.625
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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