Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2090PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein. (1178 aa)    
Predicted Functional Partners:
Plim_2089
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_2265 hypothetical protein.
 
     0.897
Plim_3983
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
 
 0.853
Plim_3989
Cytochrome c oxidase, subunit II.
  
 
 0.845
Plim_1438
Hypothetical protein; KEGG: dol:Dole_0200 cytochrome c class I.
  
 
   0.792
Plim_3780
Hypothetical protein.
  
     0.772
Plim_1150
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5708 hypothetical protein.
  
     0.768
Plim_1581
PFAM: PA14 domain protein; SMART: PA14 domain protein; KEGG: rde:RD1_3724 hypothetical protein.
  
 
   0.758
Plim_2339
PFAM: FMN-binding domain protein; KEGG: sse:Ssed_2105 hypothetical protein.
 
  
 0.742
Plim_3240
Protein of unknown function DUF1552; KEGG: proteophosphoglycan 5.
  
     0.724
Plim_4136
Hypothetical protein.
  
     0.717
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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