STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2144Hypothetical protein. (129 aa)    
Predicted Functional Partners:
Plim_2142
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: scl:sce7193 putative DNA-binding protein.
       0.682
Plim_2143
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gdi:GDI2802 XRE family transcriptional regulator.
       0.682
Plim_2141
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bca:BCE_2481 DNA-binding protein.
       0.572
Plim_2145
PFAM: ferric-uptake regulator; KEGG: ank:AnaeK_3863 ferric uptake regulator, Fur family; Belongs to the Fur family.
       0.401
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.