STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2145PFAM: ferric-uptake regulator; KEGG: ank:AnaeK_3863 ferric uptake regulator, Fur family; Belongs to the Fur family. (164 aa)    
Predicted Functional Partners:
Plim_1993
PFAM: ABC-3 protein; iron dependent repressor; KEGG: rce:RC1_2461 zinc transport system membrane protein TroC.
 
  
 0.793
Plim_1992
PFAM: ABC-3 protein; iron dependent repressor; SMART: iron dependent repressor; KEGG: rce:RC1_2462 zinc transport system membrane protein TroD.
  
  
 0.759
Plim_0808
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gme:Gmet_2723 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
  
  
 0.731
Plim_2387
KEGG: bcb:BCB4264_A5103 transcriptional regulator, DeoR family.
  
    0.705
Plim_0602
PFAM: RNA polymerase alpha subunit domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_1087 TPR repeat-containing protein.
   
 
 0.678
Plim_0560
PFAM: CoA-binding domain protein; KEGG: CoA-binding domain protein.
  
    0.665
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.643
Plim_2146
PFAM: Anti-sigma-28 factor FlgM family protein.
       0.605
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.510
Plim_1994
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_2839 ABC transporter related.
  
  
 0.502
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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