STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2160PFAM: amidohydrolase 2; KEGG: bha:BH0493 hypothetical protein. (431 aa)    
Predicted Functional Partners:
Plim_1355
KEGG: sus:Acid_7772 hypothetical protein.
 
  
 0.931
Plim_3818
Oxidoreductase domain protein; KEGG: hypothetical protein.
     
  0.900
Plim_2162
PFAM: SMP-30/Gluconolaconase/LRE domain protein; Arylesterase; putative esterase; KEGG: sus:Acid_3430 gluconolactonase.
     
  0.800
Plim_3736
Nucleotide sugar dehydrogenase; KEGG: HNRNPUL2, HNRPUL2; heterogeneous nuclear ribonucleoprotein U-like 2.
     
  0.800
Plim_3928
Gluconolactonase.
     
  0.800
Plim_0937
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.765
Plim_4206
Xylose isomerase domain protein TIM barrel.
  
     0.763
Plim_3249
Hypothetical protein.
  
     0.762
Plim_2156
KEGG: sus:Acid_4453 transmembrane prediction; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.747
Plim_2616
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.744
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.