Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Plim_2161PFAM: Stage II sporulation E family protein; Forkhead-associated protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; Forkhead-associated protein; GAF domain protein; KEGG: sus:Acid_3432 serine phosphatase. (566 aa)    
Predicted Functional Partners:
Plim_2056
KEGG: aba:Acid345_2985 putative anti-sigma regulatory factor, serine/threonine protein kinase.
 
 
 0.942
Plim_3703
Response regulator receiver.
 
 
 0.924
Plim_2762
PAS sensor protein.
 
  
 0.921
Plim_2057
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dal:Dalk_4200 anti-sigma-factor antagonist.
 
   0.917
Plim_0678
Ammonium transporter; KEGG: pla:Plav_1427 integral membrane sensor signal transduction histidine kinase; TIGRFAM: ammonium transporter; PAS sensor protein; PFAM: Rh family protein/ammonium transporter; ATP- binding region ATPase domain protein; Hpt domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein.
 
  
 0.903
Plim_2761
Response regulator receiver.
 
 
 0.875
Plim_2329
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: scl:sce7775 hypothetical protein.
 
 
 0.864
Plim_2860
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
   0.848
Plim_3097
Flagellar assembly protein FliH.
  
 
 0.818
Plim_4041
Surface presentation of antigens (SPOA) protein.
  
 
 0.814
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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