STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2162PFAM: SMP-30/Gluconolaconase/LRE domain protein; Arylesterase; putative esterase; KEGG: sus:Acid_3430 gluconolactonase. (581 aa)    
Predicted Functional Partners:
Plim_1972
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; KEGG: sus:Acid_3123 putative heme-binding protein.
  
  
  0.938
Plim_3928
Gluconolactonase.
  
  
 
0.928
Plim_3181
Short-chain dehydrogenase/reductase SDR.
  
 
 0.912
Plim_4017
Alcohol dehydrogenase zinc-binding domain protein; KEGG: proteophosphoglycan ppg4.
  
 
  0.907
Plim_3818
Oxidoreductase domain protein; KEGG: hypothetical protein.
  
 
  0.830
Plim_2160
PFAM: amidohydrolase 2; KEGG: bha:BH0493 hypothetical protein.
     
  0.800
Plim_1975
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
  
     0.610
Plim_3819
Oxidoreductase domain protein.
  
    0.605
Plim_0018
PFAM: protein of unknown function DUF1080; KEGG: swd:Swoo_0366 hypothetical protein.
  
     0.598
Plim_3771
Dehydratase, YjhG/YagF family; Belongs to the IlvD/Edd family.
 
   
 0.586
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.