STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2196PFAM: Abortive infection protein; KEGG: predicted protein. (325 aa)    
Predicted Functional Partners:
Plim_1317
PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: bte:BTH_I0513 FHA domain-containing protein.
  
     0.622
Plim_1336
Membrane protein-like protein.
  
     0.611
Plim_0675
SMART: Tetratricopeptide domain protein; KEGG: SLEI family protein.
  
     0.573
Plim_0734
PFAM: protein of unknown function DUF820; KEGG: mrd:Mrad2831_3531 hypothetical protein.
  
     0.565
Plim_0058
KEGG: mxa:MXAN_5780 putative efflux ABC transporter, permease protein PilI.
  
     0.551
trpC
PFAM: Indole-3-glycerol phosphate synthase; KEGG: gme:Gmet_2494 indole-3-glycerol-phosphate synthase; Belongs to the TrpC family.
       0.550
Plim_3847
Glycoside hydrolase family 10.
  
     0.541
Plim_2197
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.514
Plim_0315
PFAM: PspA/IM30 family protein; KEGG: vsp:VS_1991 phage shock protein A.
  
     0.486
Plim_0322
PFAM: protein of unknown function DUF820.
  
     0.473
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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