STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2198PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: sus:Acid_1518 oxidoreductase domain- containing protein. (359 aa)    
Predicted Functional Partners:
Plim_4103
Nucleotide sugar dehydrogenase; KEGG: MUC1; GPI-anchored cell surface glycoprotein (flocculin) required for pseudohyphal formation, invasive growth, flocculation, and biofilms; transcriptionally regulated by the MAPK pathway (via Ste12p and Tec1p) and the cAMP p-TRUNCATED-; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
 
  0.938
Plim_3765
Oxidoreductase domain protein; KEGG: Hypothetical protein CBG16424.
  
     0.745
Plim_1283
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_4454 oxidoreductase domain- containing protein.
  
     0.654
Plim_1532
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_3331 oxidoreductase domain- containing protein.
  
     0.635
Plim_2197
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.607
Plim_3712
Oxidoreductase domain protein; KEGG: Srrm2; serine/arginine repetitive matrix 2.
  
     0.602
Plim_0836
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: dol:Dole_1884 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.576
Plim_3510
Oxidoreductase domain protein.
  
     0.536
Plim_3819
Oxidoreductase domain protein.
  
     0.521
Plim_2199
PFAM: conserved hypothetical protein; KEGG: pag:PLES_49631 hypothetical protein.
       0.516
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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