STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2212Hypothetical protein; KEGG: bba:Bd1720 putative permease. (490 aa)    
Predicted Functional Partners:
Plim_0926
KEGG: hypothetical protein.
  
     0.622
Plim_1668
KEGG: ade:Adeh_2066 hypothetical protein.
  
     0.534
Plim_2370
KEGG: sus:Acid_5886 outer membrane efflux protein.
  
     0.496
Plim_0655
PFAM: Pericardin like; KEGG: GI11778 gene product from transcript GI11778- RA.
  
     0.494
Plim_2213
Hypothetical protein.
       0.485
Plim_1880
PFAM: PEBP family protein; KEGG: hypothetical protein.
  
     0.475
Plim_4112
Polysaccharide export protein; KEGG: hypothetical protein.
  
     0.455
Plim_3772
Conserved hypothetical protein.
  
     0.449
Plim_2751
Conserved hypothetical protein.
 
  
 0.428
Plim_2211
PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: cja:CJA_1811 FHA domain protein.
       0.426
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.