STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2236PFAM: permease; KEGG: pca:Pcar_0353 permease. (526 aa)    
Predicted Functional Partners:
Plim_2239
PFAM: protein of unknown function DUF58; KEGG: gur:Gura_0188 hypothetical protein.
 
    0.772
Plim_2238
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: aba:Acid345_2146 transglutaminase-like.
 
     0.761
Plim_2237
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: gur:Gura_0187 ATPase.
       0.643
Plim_0090
Conserved hypothetical protein; KEGG: outer membrane efflux protein.
  
     0.633
Plim_0769
PFAM: Abortive infection protein; KEGG: scl:sce0660 putative ABC transporter sodium permease.
  
    0.558
Plim_4083
Protein of unknown function DUF1559.
  
     0.475
Plim_0154
SMART: HTTM domain protein; KEGG: bba:Bd2937 hypothetical protein.
  
     0.447
Plim_3478
Zinc/iron permease.
  
    0.445
Plim_1372
KEGG: abo:ABO_0802 hypothetical protein.
  
     0.405
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.