STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2238PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: aba:Acid345_2146 transglutaminase-like. (862 aa)    
Predicted Functional Partners:
Plim_2239
PFAM: protein of unknown function DUF58; KEGG: gur:Gura_0188 hypothetical protein.
 
    0.958
Plim_2237
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: gur:Gura_0187 ATPase.
 
     0.832
Plim_2236
PFAM: permease; KEGG: pca:Pcar_0353 permease.
 
     0.761
Plim_0817
PFAM: protein of unknown function DUF58; KEGG: scl:sce8272 hypothetical protein.
  
    0.736
Plim_0154
SMART: HTTM domain protein; KEGG: bba:Bd2937 hypothetical protein.
  
     0.702
Plim_0090
Conserved hypothetical protein; KEGG: outer membrane efflux protein.
  
     0.684
Plim_1372
KEGG: abo:ABO_0802 hypothetical protein.
  
     0.614
Plim_2370
KEGG: sus:Acid_5886 outer membrane efflux protein.
  
     0.550
Plim_4014
ATPase associated with various cellular activities AAA_3.
  
     0.507
Plim_4083
Protein of unknown function DUF1559.
  
     0.502
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.