STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2240PFAM: acyltransferase 3; KEGG: rpe:RPE_2290 acyltransferase 3. (430 aa)    
Predicted Functional Partners:
Plim_0743
KEGG: atc:AGR_C_4472 hypothetical protein.
  
     0.566
Plim_1194
PFAM: peptidase M41; KEGG: gur:Gura_0348 hypothetical protein.
  
     0.541
Plim_1055
PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
     
 0.507
Plim_2029
Hypothetical protein; KEGG: bca:BCE_A0190 cytochrome c biogenesis protein, putative.
  
     0.488
Plim_1080
SMART: AAA ATPase; KEGG: mxa:MXAN_5509 hypothetical protein.
   
    0.483
Plim_3874
Capsular exopolysaccharide family; KEGG: proteophosphoglycan ppg3.
     
 0.475
Plim_4111
Capsular exopolysaccharide family.
     
 0.475
Plim_2803
Membrane-bound dehydrogenase domain protein; KEGG: predicted gene, 100042430.
  
     0.459
Plim_1424
Hypothetical protein; KEGG: smt:Smal_2395 porin.
  
     0.452
Plim_4016
PDZ/DHR/GLGF domain protein.
  
     0.448
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.