Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_2244PFAM: Squalene/phytoene synthase; KEGG: sus:Acid_1266 farnesyl-diphosphate farnesyltransferase. (303 aa)    
Predicted Functional Partners:
Plim_2742
Phytoene desaturase.
 
 
 0.988
Plim_3204
Squalene-associated FAD-dependent desaturase.
   
 0.978
Plim_2740
Phytoene desaturase.
 
  
 0.889
Plim_0149
Trans-hexaprenyltranstransferase; PFAM: Polyprenyl synthetase; KEGG: csa:Csal_0473 trans- hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.885
Plim_2441
PFAM: Polyprenyl synthetase; KEGG: ppd:Ppro_2404 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.884
Plim_2915
Protein of unknown function DUF116.
  
 0.884
Plim_0265
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
 0.823
Plim_0647
KEGG: bha:BH3560 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.802
Plim_1967
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2418 MATE efflux family protein.
   
    0.672
Plim_3815
MATE efflux family protein.
   
    0.672
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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