Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Plim_2250PFAM: amidohydrolase 2; KEGG: smd:Smed_4981 amidohydrolase 2. (304 aa)    
Predicted Functional Partners:
Plim_1189
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bxe:Bxe_C1347 putative mandelate racemase/muconate lactonizing enzyme.
 
   
 0.654
Plim_3793
Demethylmenaquinone methyltransferase-like protein.
 
   
 0.647
Plim_3799
Altronate dehydratase.
 
     0.516
Plim_0646
SMART: metal-dependent phosphohydrolase HD region; KEGG: bte:BTH_II2048 hypothetical protein.
  
     0.415
Plim_3928
Gluconolactonase.
 
     0.414
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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