STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2271PFAM: peptidase A24A prepilin type IV; KEGG: vvu:VV1_1623 type 4 prepilin-like proteins leader peptide processing enzyme. (348 aa)    
Predicted Functional Partners:
Plim_2474
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: mxa:MXAN_2626 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.748
Plim_0049
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: hha:Hhal_2324 DNA protecting protein DprA.
  
  
 0.712
Plim_2967
Helix-hairpin-helix DNA-binding class 1.
  
  
 0.673
secF
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
   
 0.543
Plim_2272
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: sus:Acid_7190 ammonium transporter.
       0.484
aroE
3-dehydroquinate dehydratase, type I; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA); Belongs to the type-I 3-dehydroquinase family.
  
    0.453
Plim_1543
KEGG: hypothetical protein; K03785 3-dehydroquinate dehydratase I.
  
    0.424
Plim_4238
Protein of unknown function DUF1559.
  
    0.407
Plim_0090
Conserved hypothetical protein; KEGG: outer membrane efflux protein.
  
    0.406
Plim_2805
Outer membrane efflux protein.
  
    0.406
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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