Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_2272TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: sus:Acid_7190 ammonium transporter. (467 aa)    
Predicted Functional Partners:
Plim_2273
PFAM: nitrogen regulatory protein P-II; KEGG: ppd:Ppro_1680 nitrogen regulatory protein P- II; Belongs to the P(II) protein family.
 
 0.989
Plim_2274
PFAM: nitrogen regulatory protein P-II; KEGG: cak:Caul_2852 nitrogen regulatory protein P- II; Belongs to the P(II) protein family.
 
 0.988
Plim_3695
Conserved hypothetical protein.
  
 
 0.815
Plim_2694
Glutamate synthase (NADH).
 
  
 0.663
Plim_2271
PFAM: peptidase A24A prepilin type IV; KEGG: vvu:VV1_1623 type 4 prepilin-like proteins leader peptide processing enzyme.
       0.484
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.462
Plim_1395
PFAM: fumarate lyase; KEGG: pap:PSPA7_6217 aspartate ammonia-lyase.
   
  
 0.402
Plim_0683
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: afw:Anae109_4400 glutamine synthetase, type I.
  
  
 0.401
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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