Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_2307PFAM: inner-membrane translocator; KEGG: mxa:MXAN_6664 branched-chain amino acid ABC transporter, permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (321 aa)    
Predicted Functional Partners:
Plim_2308
PFAM: inner-membrane translocator; KEGG: ade:Adeh_4259 ABC branched-chain amino acid transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
Plim_2309
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bba:Bd3388 branched-chain amino acid transport system.
 
 0.999
Plim_2306
PFAM: Extracellular ligand-binding receptor; KEGG: afw:Anae109_4416 extracellular ligand-binding receptor.
 
 
 0.998
Plim_2310
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV_1506 leucine/isoleucine/valine transport system ATP-binding protein.
 
 0.996
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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