STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2308PFAM: inner-membrane translocator; KEGG: ade:Adeh_4259 ABC branched-chain amino acid transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family. (372 aa)    
Predicted Functional Partners:
Plim_2306
PFAM: Extracellular ligand-binding receptor; KEGG: afw:Anae109_4416 extracellular ligand-binding receptor.
 
 
 0.999
Plim_2307
PFAM: inner-membrane translocator; KEGG: mxa:MXAN_6664 branched-chain amino acid ABC transporter, permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
Plim_2309
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bba:Bd3388 branched-chain amino acid transport system.
 
 0.999
Plim_2310
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV_1506 leucine/isoleucine/valine transport system ATP-binding protein.
 
 0.999
Plim_3424
SCP-like extracellular.
   
   0.911
Plim_1126
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hip:CGSHiEE_06305 ABC transporter ATP-binding protein.
 
      0.899
Plim_0070
Heme exporter protein CcmA; KEGG: bcr:BCAH187_A1915 ABC transporter, ATP- binding protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase.
      0.847
Plim_0779
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce4029 ribose ABC transporter ATP- binding protein.
    
 0.815
cysA
Sulfate ABC transporter, ATPase subunit; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
 
      0.802
secF
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
   
    0.590
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (26%) [HD]