Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Plim_2317KEGG: net:Neut_1053 hypothetical protein. (572 aa)    
Predicted Functional Partners:
Plim_0920
PFAM: outer membrane chaperone Skp (OmpH); KEGG: swp:swp_3512 outer membrane protein (OmpH- like).
    
 
 0.810
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
    
 
 0.733
Plim_0154
SMART: HTTM domain protein; KEGG: bba:Bd2937 hypothetical protein.
  
   
 0.732
Plim_1209
PFAM: outer membrane chaperone Skp (OmpH); KEGG: gme:Gmet_2356 outer membrane chaperone Skp (OmpH).
    
 
 0.701
Plim_1987
KEGG: sus:Acid_5332 hypothetical protein.
  
     0.634
Plim_2888
Hypothetical protein; KEGG: GK17577 gene product from transcript GK17577- RA.
  
     0.603
Plim_4107
Hypothetical protein.
  
     0.598
Plim_2028
KEGG: nar:Saro_3787 outer membrane protein-like protein.
  
   
 0.584
Plim_2316
Hypothetical protein; KEGG: nmu:Nmul_A0278 glycosyl transferase family protein.
 
     0.581
Plim_0034
Biotin apo-protein ligase-related protein; KEGG: hypothetical protein.
  
     0.577
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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