Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_2328PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: saz:Sama_1468 putative macrolide efflux ABC transporter, ATP-binding protein. (226 aa)    
Predicted Functional Partners:
Plim_0127
PFAM: protein of unknown function DUF214; KEGG: saz:Sama_1472 ABC transporter permease protein.
 
 0.977
Plim_3659
Protein of unknown function DUF214; KEGG: eba:ebA7253 hypothetical protein.
 
   0.847
Plim_3164
Protein of unknown function DUF214.
 
 
 0.731
Plim_2518
PFAM: protein of unknown function DUF214; KEGG: glo:Glov_0758 lipoprotein releasing system, transmembrane protein, LolC/E family.
  
   0.631
Plim_2108
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mmw:Mmwyl1_4145 ATPase central domain- containing protein.
  
     0.616
Plim_2519
PFAM: AAA ATPase central domain protein; KEGG: AAA family ATPase, putative.
  
     0.606
Plim_1965
PFAM: protein of unknown function DUF214; KEGG: vco:VC0395_A2132 hypothetical protein.
  
   0.569
pheS
TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: shl:Shal_1812 phenylalanyl-tRNA synthetase subunit alpha; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
   0.550
Plim_0935
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: ppd:Ppro_3025 ABC transporter related.
 
    
0.513
Plim_2329
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: scl:sce7775 hypothetical protein.
       0.475
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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