STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2347PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: gme:Gmet_3052 peptidase S1C, HrtA/DegP2/Q/S. (669 aa)    
Predicted Functional Partners:
Plim_1811
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: mxa:MXAN_4330 periplasmic serine protease, DO/DeqQ family.
  
     0.775
Plim_2552
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: ilo:IL0411 periplasmic trypsin-like serine protease.
  
     0.774
Plim_1810
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: nma:NMA0710 putative periplasmic serine protease.
  
     0.766
Plim_1010
Trypsin-like protein serine protease typically periplasmic containing C-terminal PDZ domain; KEGG: HTRA2; HtrA serine peptidase 2; K08669 HtrA serine peptidase 2.
  
     0.748
Plim_2762
PAS sensor protein.
  
  
 0.461
Plim_2519
PFAM: AAA ATPase central domain protein; KEGG: AAA family ATPase, putative.
    
  0.438
Plim_3061
ATP-binding region ATPase domain protein.
  
  
 0.401
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.