STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2353SMART: serine/threonine protein kinase; KEGG: afw:Anae109_0119 protein kinase. (799 aa)    
Predicted Functional Partners:
Plim_2352
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: pca:Pcar_0061 ABC-type transport system, permease component.
       0.598
Plim_0575
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; WD-40 repeat protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: hypothetical protein.
  
     0.578
Plim_3456
Serine/threonine protein kinase-related protein.
  
     0.532
Plim_2175
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: SL44-1; basic proline-rich protein.
  
     0.517
Plim_2836
KEGG: hypothetical protein LOC714502.
  
     0.503
Plim_1234
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function RIO1; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: azo:azo0898 putative serine/threonine protein kinase.
  
     0.483
Plim_2266
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function RIO1; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: ade:Adeh_2796 serine/threonine protein kinase.
  
     0.483
Plim_0987
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; WD-40 repeat protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: sus:Acid_3680 serine/threonine protein kinase.
  
     0.472
Plim_3104
Serine/threonine protein kinase-related protein.
  
     0.461
Plim_0227
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: bha:BH2504 serine/threonine protein kinase.
  
     0.441
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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