Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_2370KEGG: sus:Acid_5886 outer membrane efflux protein. (509 aa)    
Predicted Functional Partners:
Plim_1584
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dar:Daro_2627 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.856
Plim_1668
KEGG: ade:Adeh_2066 hypothetical protein.
  
     0.760
Plim_3019
Hypothetical protein; KEGG: Spty2d1, RGD1560454_predicted; SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae).
  
     0.752
Plim_2177
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: vfi:VF_2133 periplasmic component of efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.738
Plim_0090
Conserved hypothetical protein; KEGG: outer membrane efflux protein.
  
  
  0.733
Plim_2028
KEGG: nar:Saro_3787 outer membrane protein-like protein.
  
  
  0.702
Plim_0154
SMART: HTTM domain protein; KEGG: bba:Bd2937 hypothetical protein.
  
     0.700
Plim_0259
Hypothetical protein; KEGG: acp:A2cp1_0259 tetratricopeptide TPR_2 repeat protein.
  
     0.651
Plim_1011
Hypothetical protein; KEGG: hne:HNE_2881 alpha/beta fold family hydrolase.
  
 
   0.639
Plim_0926
KEGG: hypothetical protein.
  
     0.636
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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