STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2374PFAM: sulfatase; KEGG: rpd:RPD_2516 sulfatase. (802 aa)    
Predicted Functional Partners:
Plim_1467
PFAM: protein of unknown function DUF1254; protein of unknown function DUF1214; KEGG: rpd:RPD_3684 hypothetical protein.
  
     0.677
Plim_2371
PFAM: sulfatase; KEGG: rle:RL1236 putative arylsulfatase.
 
    
0.673
Plim_2373
KEGG: rde:RD1_0622 hypothetical protein.
       0.671
Plim_2372
PFAM: sulfatase; KEGG: rpd:RPD_2522 sulfatase.
 
    
0.659
Plim_2375
Hypothetical protein.
       0.590
Plim_4039
Conserved hypothetical protein.
  
    0.486
Plim_3918
Protein of unknown function DUF1214; KEGG: SFRS2B; splicing factor, arginine/serine-rich 2B.
  
     0.482
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.