Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_2398KEGG: mpt:Mpe_A2083 hypothetical protein. (863 aa)    
Predicted Functional Partners:
Plim_1481
PFAM: glycosyl transferase family 2; KEGG: sus:Acid_1399 glycosyl transferase family protein.
 
     0.585
Plim_0322
PFAM: protein of unknown function DUF820.
  
     0.539
Plim_1609
PFAM: protein of unknown function DUF820; KEGG: scl:sce6780 hypothetical protein.
  
     0.530
Plim_3729
WD40 domain protein beta Propeller.
  
     0.503
Plim_3067
YD repeat protein; KEGG: bpm:BURPS1710b_1103 hypothetical protein.
  
     0.488
Plim_2663
Hypothetical protein; KEGG: MUC2; mucin 2, oligomeric mucus/gel-forming; K10955 intestinal mucin-2.
  
     0.485
Plim_0143
KEGG: oca:OCAR_5635 hypothetical protein.
  
     0.469
Plim_1415
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: acp:A2cp1_4421 hypothetical protein.
  
     0.468
Plim_1600
KEGG: dal:Dalk_2288 YD repeat protein.
  
     0.468
Plim_1602
KEGG: dal:Dalk_2288 YD repeat protein.
  
     0.467
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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