Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_2400PFAM: protein of unknown function DUF111; KEGG: mxa:MXAN_6689 hypothetical protein; Belongs to the LarC family. (475 aa)    
Predicted Functional Partners:
Plim_2185
KEGG: scl:sce5850 hypothetical protein.
 
 0.992
Plim_0061
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: aba:Acid345_1347 hypothetical protein.
 
  
 0.939
Plim_2304
KEGG: hypothetical protein.
 
  
 0.783
Plim_2352
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: pca:Pcar_0061 ABC-type transport system, permease component.
 
    0.635
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
 
      0.618
Plim_2399
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sit:TM1040_0066 anti-sigma-factor antagonist.
       0.506
Plim_3004
Iron-sulfur cluster binding protein.
 
  
 0.459
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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