STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2410PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pla:Plav_3170 hypothetical protein. (408 aa)    
Predicted Functional Partners:
Plim_2260
PFAM: cytochrome P450; KEGG: bha:BH0579 cytochrome P450 hydroxylase.
  
 
 0.811
Plim_1110
PFAM: ABC-1 domain protein; KEGG: gsu:GSU1088 ubiquinone biosynthesis protein AarF, putative.
   
 0.756
Plim_3117
NUDIX hydrolase.
  
  
 0.744
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
 
    0.721
Plim_1055
PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
  
 0.687
Plim_0045
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: pla:Plav_2493 methyltransferase type 11.
   
 0.631
Plim_0658
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_0661 methyltransferase type 11.
   
 0.631
Plim_1452
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cvi:CV_1613 3-demethylubiquinone-9 3- methyltransferase.
   
 0.631
Plim_1935
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mgm:Mmc1_0495 methyltransferase type 12.
   
 0.631
Plim_2682
Methyltransferase type 12.
   
 0.631
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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