Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2416Hypothetical protein; KEGG: sus:Acid_2651 putative O-antigen related protein. (326 aa)    
Predicted Functional Partners:
Plim_2720
Lipolytic protein G-D-S-L family.
 
     0.972
Plim_4136
Hypothetical protein.
 
     0.964
Plim_2912
1-alkyl-2-acetylglycerophosphocholine esterase.
 
     0.924
Plim_0777
Hypothetical protein; KEGG: sus:Acid_1077 alpha/beta hydrolase domain- containing protein.
  
     0.736
Plim_3447
Glycosyl hydrolase BNR repeat-containing protein.
 
     0.705
Plim_3114
Hypothetical protein; KEGG: bpm:BURPS1710b_A2370 200 kDa antigen p200, putative.
  
     0.702
Plim_0094
KEGG: hypothetical protein.
  
     0.690
Plim_2856
Neuraminidase (sialidase)-like protein; KEGG: proteophosphoglycan 5.
 
     0.668
Plim_0117
PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: tbd:Tbd_1475 hypothetical protein.
  
     0.650
Plim_1563
PFAM: metallophosphoesterase; KEGG: mch:Mchl_2770 metallophosphoesterase.
  
     0.645
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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