Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2418KEGG: swi:Swit_3221 hypothetical protein. (223 aa)    
Predicted Functional Partners:
Plim_3168
Spore coat protein CotH; KEGG: hypothetical protein.
  
     0.733
Plim_3169
Hypothetical protein.
  
     0.694
Plim_2746
PBS lyase HEAT domain protein repeat-containing protein.
  
     0.684
Plim_0542
PFAM: metallophosphoesterase; KEGG: hypothetical protein.
  
     0.564
Plim_3067
YD repeat protein; KEGG: bpm:BURPS1710b_1103 hypothetical protein.
  
     0.559
Plim_2419
KEGG: ppd:Ppro_0226 hypothetical protein.
       0.548
Plim_3165
Protein of unknown function DUF214.
  
     0.544
Plim_1036
AmoP; SMART: AMOP; KEGG: dal:Dalk_2288 YD repeat protein.
  
     0.493
Plim_2417
PFAM: protein of unknown function DUF1559; KEGG: bam:Bamb_1440 type II secretion system protein G.
  
     0.451
Plim_3702
Xylose isomerase domain protein TIM barrel.
  
     0.429
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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