STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2431KEGG: scl:sce8934 hypothetical protein. (327 aa)    
Predicted Functional Partners:
Plim_1206
Hypothetical protein; KEGG: similar to Stretchin-Mlck CG18255-PA, isoform A.
  
     0.628
Plim_4241
RDD domain containing protein.
 
     0.527
Plim_3664
Hypothetical protein.
  
     0.520
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
       0.476
Plim_3408
KEGG: azo:azo2666 hypothetical protein.
  
     0.476
Plim_3019
Hypothetical protein; KEGG: Spty2d1, RGD1560454_predicted; SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae).
  
     0.433
Plim_0839
ATPase-like protein involved in DNA repair; KEGG: liver stage antigen.
  
     0.419
Plim_0824
KEGG: scl:sce5903 hypothetical protein.
 
     0.418
Plim_2432
TIGRFAM: adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: aha:AHA_2412 adenylate cyclase.
       0.408
Plim_1880
PFAM: PEBP family protein; KEGG: hypothetical protein.
  
     0.405
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.