Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Plim_24345'-nucleotidase/2' 3'-cyclic phosphodiesterase-like esterase; KEGG: sfu:Sfum_1622 40-residue YVTN family beta- propeller repeat protein. (590 aa)    
Predicted Functional Partners:
Plim_2435
PFAM: protein of unknown function DUF1573; KEGG: gur:Gura_3399 hypothetical protein.
 
     0.800
Plim_2959
Cytochrome c class I.
  
   
 0.705
Plim_3249
Hypothetical protein.
  
     0.682
Plim_0306
PFAM: A-macroglobulin complement component; KEGG: mxa:MXAN_5864 hypothetical protein.
 
    0.676
Plim_4206
Xylose isomerase domain protein TIM barrel.
  
     0.667
Plim_2824
Protein of unknown function DUF1559.
  
     0.644
Plim_2313
KEGG: mxa:MXAN_5863 hypothetical protein.
  
     0.634
Plim_1803
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: afw:Anae109_4420 hypothetical protein.
  
     0.620
Plim_3310
Conserved hypothetical protein.
  
     0.609
Plim_1805
Hypothetical protein.
  
     0.605
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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